Over the last 18 months we've been working closely with the European Bioinformatics Institute on a project to improve their use of open source search engines, funded by the BBSRC. The project was originally named BioSolr but has since grown to encompass Continue reading
Tag Archives: biosolr
Better search for life sciences at the BioSolr Workshop, day 1 – Apache Lucene/Solr
Over the last 18 months we've been working closely with the European Bioinformatics Institute on a project to improve their use of open source search engines, funded by the BBSRC. The project was originally named BioSolr but has since grown to encompass Continue reading
XJoin for Solr, part 2: a click-through example
In my last blog post, I demonstrated how to set up and configure Solr to use the new XJoin search components we've developed for the BioSolr project, using an example from an e-commerce setting. This time, I'll show...Continue reading
The fun and frustration of writing a plugin for Elasticsearch for ontology indexing
As part of our work on the BioSolr project, I have been continuing to work on the various Elasticsearch ontology annotation plugins (note that even though the project started with a focus on Solr - thus the name - we have also been developing some features for Ela...Continue reading
Lucene/Solr Revolution 2015: BioSolr – Searching the stuff of life
Open source search events roundup for late 2015
Although it's still high summer here in the UK (which means it's probably raining) we're already looking forward to the autumn and the events across the world we're attending. In early September we're running another free to attend London Lucene/Solr Usergroup Meetup, sponsored this time by Blackrock who are talking about using Solr for websites. At the end of Septem...Continue reading
BioSolr at BOSC 2015 – open source search for bioinformatics
Matt Pearce writes: I spent most of last Friday at the Bioinformatics Open Source Conference (BOSC) Special Interest Group meeting in Dublin, as part of this year's ISMB/ECCB conference. Tony Burdett from EMBL-EBI was giving a quick talk about the BioSolrContinue reading
BioSolr begins with a workshop day
Last Thursday we attended a workshop day at the European Bioinformatics Institute as part of our joint BioSolr project. This was an opportunity for us to give some talks on particular aspects of Apache Lucene/Solr and hear from the various teams there on how they are using the software. The workshop was oversubscri...Continue reading
BioSolr – building better search for bioinformatics
The entire Flax technical team spent the day at the European Bioinformatics Institute yesterday discussing an exciting new project we'll begin this coming September, BioSolr. Funded by the BBSRC this collaboration between Flax and the EBI aims “to significantly advance the state of the art with regard to indexing and querying biomedical data with freely available open source software”. Continue reading